CoVerage Results

Datasets generated from GISAID metadata for the figures in the CoVerage manuscript. Data includes the results for the months of November 2021 to January 2021 and January 2023 to March 2023.

11_2021

11-2021_fig3_lineage_dynamics_summary_statistics.csv - summary statistics or frequency data for selected pVOIs for the month of 11-2021

11-2021_fig4_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 11-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein

11-2021_fig4_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 11-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation

11-2021_fig4_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 11-2021 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation

11-2021_fig4_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 11-2021 using the scoring method of applying weights at all sites across the spike protein

12_2021

12-2021_fig3_lineage_dynamics_summary_statistics.csv - summary statistics or frequency data for selected pVOIs for the month of 12-2021

12-2021_fig4_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 12-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein

12-2021_fig4_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 12-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation

12-2021_fig4_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 12-2021 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation

12-2021_fig4_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 12-2021 using the scoring method of applying weights at all sites across the spike protein

01_2022

01-2022_fig4_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 01-2022 using the scoring technique of applying weights at known antigenic sites on the spike protein

01-2022_fig4_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 01-2022 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation

01-2022_fig4_antigenic_scores_map_visualization_all_sites.csv - 

calculated country antigenic scores for the month of 01-2022 using the scoring method of applying weights at all sites across the spike protein

01-2022_fig4_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 01-2022 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation

01_2023

01-2023_fig5_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 01-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein

01-2023_fig5_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 01-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation

01-2023_fig5_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 01-2023 using the scoring method of applying weights at all sites across the spike protein

01-2023_fig5_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 01-2023 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation

02_2023

02-2023_fig5_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 02-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein

02-2023_fig5_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 02-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation

02-2023_fig5_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 02-2023 using the scoring method of applying weights at all sites across the spike protein

02-2023_fig5_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 02-2023 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation

03_2023

03-2023_fig5_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 03-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein

03-2023_fig5_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 03-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation

03-2023_fig5_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 03-2023 using the scoring method of applying weights at all sites across the spike protein

03-2023_fig5_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 03-2023 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation