Genotype specific transcriptome assemblies - Fasta files

Genotype-specific de novo transcriptome assemblies from sugarcane RNASeq public datasets.
RAW RNASeq reads (paired-end and strand-specific) were downloaded from SRA's NCBI, cleaned with BBDuk and putative contaminant reads removed with ContFree-NGS. Clean reads were assembled into transcripts with Trinity using two kmers, 25 and 31. The two assemblies were merged using CD-HIT-EST at 100% identity and keeping strand orientation.