Effects of error correction on the improved TPA Nichols-RS genome with respect to comparisons with other TPA strains.

The left part of the table shows former number of differences between the original TPA Nichols genome (AE000520.1) and other TPA genomes, the right part of the table shows verified number of differences between the improved TPA Nichols genome (CP004010.2) and other TPA genomes. Numbers in brackets show the percentage of verified differences between the improved TPA Nichols genome and other genomes compared to numbers observed during the comparison of the original Nichols genome and other TPA genomes. Because of high sequence diversities, tprD and tprK were excluded from the analyses.sub, substitution; in, insertion; del, deletion.