Dataset and scripts used in "Giant linear plasmids from Mycobacterium avium harbor a tRNA array unit"

The compressed file contains working directories, data, command lists, and scripts to reproduce data analysis performed in "Giant linear plasmids from Mycobacterium avium harbor a tRNA array unit" by Yano H, Arikawa K, Ikeda H, Nonoyama S, Maruyama F, Kitada S, Kida H, Ato M, Iwamoto T, and Nishiuchi Y. (unpublished)<br>Some parts of the data analysis require external genomic dataset. The external datasets are available from the Zenodo repository (https://doi.org/10.5281/zenodo.15822127; https://doi.org/10.5281/zenodo.15823864)<br>DFAST_gbk_files.tar.gz contains GenBank files for five strains (OCU901s_S2_2s, PPE_S58, BA018, BA059, BA705) generated by DFAST-core.ISFinder_results.xlsx contains information about Insertion Sequence (IS) locations in five genomes based on BLAST searches in ISFinder database.<br><br><br><br><br><br><br>