MOESM2 of GWAS analyses reveal QTL in egg layers that differ in response to diet differences

Additional file 2. Additional QTL detected using the data for egg production and egg quality traits within diet. This file gives the position of the QTL detected with the dataset divided by diet, with the top SNP corresponding to the SNP with the highest effect in the QTL region. The QTL is defined by the first (left) and last (right) SNPs that are 1 % significant at the chromosome level, respectively. Var (%) is the percentage of variance explained by the top SNP in the analysis with the whole dataset. Var LE(%) is the percentage of variance explained by the top SNP in the analysis with data for the low-energy diet only. Var HE(%) is the percentage of variance explained by the top SNP in the analysis with data for the high-energy diet only. Z Diet is the Z test statistic used to compare the two estimates calculated from the data for LE and HE diets. The difference was significant when P < 0.1 *, P < 0.05 ** and P < 0.01***.