Comparative single-cell transcriptomic analyses of drosophilid central brains

Datasets and scripts for the comparative single-cell transcriptomic atlases of drosophilid central brains (D. melanogaster, D. simulans and D. sechellia) Drosophila_brain.zip: Expression matrices for three species (D. melanogaster, D. simulans and D. sechellia) Plots_Data.zip: Input data for the plots (Plots.R) Annotation_Homologous_celltype.zip: Input data for the homologous cell type annotation and validation (Fig S4) Scripts.zip: R scripts for plot generation and data analysis Processed_Data.zip: Various input files for scripts Histology_Quantifications.zip: Quantification data for FISH and immunostaining Histology_Images.zip: Image files for FISH and immunostaining