Table4_MiRNA-Seq reveals key MicroRNAs involved in fat metabolism of sheep liver.XLSX

There is a genetic difference between Hu sheep (short/fat-tailed sheep) and Tibetan sheep (short/thin-tailed sheep) in tail type, because of fat metabolism. Previous studies have mainly focused directly on sheep tail fat, which is not the main organ of fat metabolism. The function of miRNAs in sheep liver fat metabolism has not been thoroughly elucidated. In this study, miRNA-Seq was used to identify miRNAs in the liver tissue of three Hu sheep (short/fat-tailed sheep) and three Tibetan sheep (short/thin-tailed sheep) to characterize the differences in fat metabolism of sheep. In our study, Hu sheep was in a control group, we identified 11 differentially expressed miRNAs (DE miRNAs), including six up-regulated miRNAs and five down-regulated miRNAs. Miranda and RNAhybrid were used to predict the target genes of DE miRNAs, obtaining 3,404 target genes. A total of 115 and 67 GO terms as well as 54 and 5 KEGG pathways were significantly (padj < 0.05) enriched for predicted 3,109 target genes of up-regulated and 295 target genes of down-regulated miRNAs, respectively. oar-miR-432 was one of the most up-regulated miRNAs between Hu sheep and Tibetan sheep. And SIRT1 is one of the potential target genes of oar-miR-432. Furthermore, functional validation using the dual-luciferase reporter assay indicated that the up-regulated miRNA; oar-miR-432 potentially targeted sirtuin 1 (SIRT1) expression. Then, the oar-miR-432 mimic transfected into preadipocytes resulted in inhibited expression of SIRT1. This is the first time reported that the expression of SIRT1 gene was regulated by oar-miR-432 in fat metabolism of sheep liver. These results could provide a meaningful theoretical basis for studying the fat metabolism of sheep.

本数据集揭示了胡羊（短尾脂肪羊）与藏绵羊（短尾瘦羊）在尾型上的遗传差异，此差异源于脂肪代谢过程。既往研究多集中于羊尾脂肪，而忽略了脂肪代谢的主要器官。关于羊肝中miRNA在脂肪代谢中的作用尚未得到全面阐释。本研究采用miRNA测序技术，对三只胡羊（短尾脂肪羊）和三只藏绵羊（短尾瘦羊）的肝组织进行miRNA鉴定，以刻画羊脂肪代谢的差异。在本研究中，胡羊作为对照组，我们鉴定出11个差异表达miRNA（DE miRNA），包括六个上调miRNA和五个下调miRNA。通过Miranda和RNAhybrid软件预测DE miRNA的目标基因，共获得3,404个目标基因。对于上调和下调miRNA预测的3,109个和295个目标基因，分别富集了115和67个GO术语以及54和5个KEGG通路，富集度均显著（padj < 0.05）。在胡羊和藏绵羊中，oar-miR-432是上调最显著的miRNA之一，而SIRT1是其潜在的靶基因。此外，利用双荧光素酶报告基因检测法进行的功能验证表明，上调miRNA oar-miR-432可能靶向sirtuin 1（SIRT1）的表达。随后，将oar-miR-432模拟物转染至前脂肪细胞中，导致SIRT1表达受抑制。这是首次报道SIRT1基因的表达在羊肝脂肪代谢过程中受到oar-miR-432的调控。这些研究结果为研究羊的脂肪代谢提供了有意义的理论依据。