Python scripts for extracting SNPs from 1-allele RAxML (phylip) files; and script for summarizing bootstrap values from RAxML 2-allele results. Additional details are commented in each script.
NOTE: This dataset was an error, it should have been published to our test instance! A python script to bring a little bit more joy into the daily research routine. It reads input from standard in,
Python scripts for extracting SNPs from 1-allele RAxML (phylip) files; and script for summarizing bootstrap values from RAxML 2-allele results. Additional details are commented in each script.
This file contains the python scripts used in this study. These scripts can be used to analysis next generation sequence data step by step, including: sorting, assembling, trimming, refining and combi
