Datasets for Léonard et al. ToRQuEMaDA: Tool for Retrieving Queried Eubacteria, Metadata and Dereplicating Assemblies

This archive provides details on the 9 datasets referenced in Table 1 of the article:A. Bacteria (49 orgs)B. Bacteria (151 orgs)C. Actinobacteria (20 orgs)D. Bacteroidetes (37 orgs)E. Chlamydia (32 orgs)F. Cyanobacteria (46 orgs)G. Firmicutes (22 orgs)H. Proteobacteria (36 orgs)I. Archaea (86 orgs)It contains 5 directories:- tables are the TSV tables with the taxonomic details and the FTP download links- 42-reports are the TSV contamination reports by our software Forty-Two (see https://metacpan.org/release/Bio-MUST-Apps-FortyTwo)- kronas are the HTML taxonomic plots generated with Krona (see https://github.com/marbl/Krona/)- supermatrices are the FASTA supermatrices of ribosomal proteins- trees are the Newick trees computed by IQ-TREE