Influence of copy number alterations in gene deregulation in cervical cancer cell lines.

a20,741 genes were explored for changes in expression with HG-ST1.0 microarray. On average 7,349 of them were CN-altered (CN+) and 13,393 did not have copy number alterations (CN−).bPotentially copy number altered genes according to data obtained with 100 k microarray. On average only 63% of those genes were explored for changes in gene expression (numbers in column n of CN+ subset).cGenes who were copy number altered in the four cell lines.dGenes who were found deregulated when all four cell lines, by triplicate, were compared together against the control sample (n = 10).eIn the genome, included genes that were found in MRRs, and in the transcriptome, include genes which were found deregulated uniformly in the four cell lines (described in d).EX+ = Genes that were up- or down- regulated in cancer cell lines compared with the control sample.