Additional file 6: of Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes
Summary table of significant SNPs. Annotation and summary statistics for all SNPs significantly differentiated between MN and ND populations. (XLSX 93 kb)
Gene ontology terms significantly ( p â<â0.05) overrepresented among genes affected by LoF variants. p values were gene rated by Bonferroni correction for multiple tests. (XLSX 13 kb)
aThe significant loci identified in the meta-analyses are listed in Table S1.bLD, the longissimus dorsi muscle; AF, abdominal fat.cthe number of SNP that surpassed the suggestive significant level at
In this study, we used the assay for transposase-accessible chromatin using sequencing (ATAC-seq) and RNA sequencing (RNA-seq) analysis to identify the accessible chromatin regions and key genes affec
