Data from: A hybrid phylogenetic–phylogenomic approach for species tree estimation in African Agama lizards with applications to biogeography, character evolution, and diversification

Sanger Sequence DataMitochondrial and nuclear loci in nexus format, with data partitioning.SangerData.nexSequence Capture LociSequence capture loci (a.k.a. anchored phylogenomics data). The data are in Nexus format (partitioned).SequenceCaptureLoci.nexHybrid PhylogenyThe final hybrid species tree for African Agama lizards (Newick format). The Sanger data (mtDNA and four nuclear genes) were used to estimate a time-calibrated species tree using *BEAST. This posterior distribution of species trees was then filtered using the anchored phylogenomics tree as a backbone constraint.HybridPhylogeny.treSequence Capture Gene TreesMaximum likelihood (ML) trees for each sequence capture gene used for species tree analyses. ML analyses were run with RAxML.SequenceCaptureGeneTrees.tre