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Additional file 1: of Computational enhancer prediction: evaluation and improvements

Figshare2019-04-06 更新2026-04-08 收录

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Table S1. Sizes of expression-pattern annotated CRM groups in REDfly. (XLSX 13 kb)

应用场景：

创建时间：

2019-04-06

计算增强子预测

基因组调控元件评估

Table S4. Data for pCRMeval for 29 training sets with varying offsets at a fixed cutoff. Values for training set sensitivity, REDfly recovery, REDfly recall, expression pattern precision and expressio

NIAID Data Ecosystem60

Additional file 6: of Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling

染色质可及性分析

顺式调控模块

Table S5.ATAC-seq peaks significantly differentially enriched (DESSeq2 nominal p < 0.2) in isolated PMCs compared to non-PMC cells. Column 1: ATAC-seq Peak Name: Peak number, obtained from ATAC-seq RP

Figshare2018-03-21 更新50

A computational genomics approach to identify cis-regulatory modules - a case study using E2F1

转录因子预测

顺式调控模块

We first trained a set of experimentally identified E2F1 targets by a ChIPModules approach, the identified module of E2F1 and AP-2alpha was validated by ChIP-chip assays. Keywords: ChIP-chip We have p

NIAID Data Ecosystem40

Additional file 4: of Computational enhancer prediction: evaluation and improvements

计算增强子预测

生物信息学评估

Table S3. Data for pCRMeval for 29 training sets on a semi-continuous scale. Values for training set sensitivity, REDfly recovery, REDfly recall, expression pattern precision and expression pattern re

NIAID Data Ecosystem60

Additional file 6: of Computational enhancer prediction: evaluation and improvements

计算增强子预测

基因组调控元件评估

Figshare2019-04-06 更新40