Neurotranscriptomics of DWV-infected honey bees

Honey bees (Apis mellifera) provide important ecosystem services to both natural and human-managed environments, but are increasingly threatened by a variety of pathogens, the most common of which is Deformed Wing Virus (DWV). DWV is known to replicate in the honey bee brain and has been documented as both improving and impairing olfactory learning and memory. We examined the transcriptomic response of the honey bee mushroom body - an area of the insect brain associated with higher cognitive functions - in bees with naturally-occurring DWV infections who varied in their ability to perform an associative learning task. RNA-seq analysis revealed increased expression of genes involved in the immune response, including important antimicrobial peptides (AMPs) such as apidaecin and abaecin, and the downregulation of other genes associated with response to a range of stressors; additionally, Gene Ontology (GO) enrichment analysis showed overrepresentation of key biological processes which form part of the immune response. We also noted significant differential expression of long non-coding RNAs (lncRNAs) presumed to be acting in a regulatory manner, and used these lncRNAs to construct potential Gene Regulatory Networks (GRNs). Strikingly, in contrast to previous studies on bees with artificially induced infections that have examined viral loads in the abdomen and non-specific areas of the brain, no correlation between DWV load and cognitive function was noted, underscoring the complexity of host-pathogen interactions in honey bee neural tissues, and highlighting benefits of a refined approach to brain transcriptomics in naturally occurring infections.