Supplementary Data - Signature Genetic Changes in the DNA Packaging Motor of Gene Transfer Agents

<strong>ADE85428_1_AlphaFold_prediction.zip:</strong> AlphaFold prediction of RcGTA TerL (ADE85428.1) protein strucutre using the simplified Colab impliementation of AlphaFold. <br> <strong>substitution_scripts.zip: </strong>scripts used to prepare for and run support vector classifier on the codeml identified substitution sites. <br> <strong>indel_scripts.zip:</strong> scripts used to prepare for an run support vector classifier on sliding windows of TerL alignment and identify informative indel events. <br> <strong>151_terL_tree.zip:</strong> contains large png of Figure 5 as well as a list of all 151 accessions included in that tree and a list of the 84 accessions considered to be RcGTA-like. <br>