Additional file 2 of Single Cell Atlas: a single-cell multi-omics human cell encyclopedia

Additional file 2:Table S1. Cell counts of the adult and fetal tissue groups at each omics level. Table S2. Filtered matrix raw read counts for scRNA-Seq across tissues in both fetal and adult groups. Cell_Count_Filtered_Matrix column represents raw read counts initially obtained from published studies or after filtering for the removal of background noises. Table S3. Statistics of the upregulated genes from adult and fetal tissues, filtered by average Log2FoldChange > 0.25 and adjusted P of 0.05. Clusters represent cell types. Genes were ranked by average log2-fold-change. Table S4. Top receptor–ligand interaction profiles of the cell types in the 38 matching adult and fetal tissues. Interaction analysis was done separately for each tissue, and information on the interaction pairs can be viewed from the first column. Table S5: Top clonotypes (VDJ gene combinations) of each cell type present in the T and B cell repertoires. Table S6. Top TFs in the pseudotime transitions of adult and fetal colon cell types. Table S7. Top receptor-ligand pairs in spatial transcriptomics of adult colons (colon 1 and colon 2) as well as in scRNA-seq adult and fetal colons. The first column represents the data type to which the interactions belong. Table ranked by decreasing interaction ratios. Table S8. Comparison of SCA with other single-cell omics databases. Green tick indicates a yes and a red cross indicates a no. Table S9. List of public resources included in the SCA database portal. SCA_PID refers to SCA-designated project identity number (PID).