Data from: Genome assembly of Danaus chrysippus and comparison with the Monarch Danaus plexippus

GENOME ASSEMBLY DATA

Dchry2_unaltered.fa.gz
Unaltered version of Dchry2 before manual edits

Dchry2.haplotigs.fasta.gz
Haplotypic contigs removed in the Purge_haplotigs step

Dchry2_to_Dchry2.2_transfers.txt
Edits of the Dchry2 assembly to produce Dchry2.2 (contig breaks, reverse complements and name changes). Columns are: new contig name, new contig start, new contig end, original contig name, original contig start, original contig end, orientation. New contig numbers indicate the chromosome they correspond to.

mxv1.200520.ragoo.rnm.fa.gz
Fasta file from of MEX_DaPlex assembly with mxdp_ fasta headers

GENE AND REPEAT ANNOTATION

danaus_plex_mex_braker_a002.sequences.tidy.gff3.gz
Sorted and tidied gff3 from MEX_DaPlex re-annotation 

danaus_plexv4_braker_a006.sequences.tidy.gff3.gz
Sorted and tidied gff3 from Dplex_v4 re-annotation 

mxv1.200520.ragoo.rnm.wDpv3.gff3.gz
gff3 file from Cei of MEX_DaPlex annotation

dplex2_uniprot-proteome_UP000596680_and_dplex_mex.fasta.gz
Protein set used for annotation of all three assemblies

functional_annotation_output.tar.gz
all output from pannzer2 regarding functinal annotation of the Dchry2.2 genome

Lepidoptera_and_danaus_chrysippus2.2.repeatmasker.gz
Custom repeat library (combination of lepidoptera and specific dchry2.2 library)