Number and analysis of read counts for cattle over the two years of the study.

(S3A) Total trypanosome read counts allocated to individual cattle and time points. (S3B) Calculation of herd averages for total trypanosome reads. (S3C) Variation in total trypanosomes over the time course at each location. (S3D) Calculation of herd averages for each trypanosome species. (S3E) Herd average read counts for each trypanosome species at each timepoint. (S3F) Average read counts per cow over 18 timepoints separated by gender. (S3G) Average read counts in Accra over 18 timepoints separated by breed. (S3H) Read counts for trypanosomes species in individual cattle at Adidome. (S3I) Read counts for trypanosome species in individual cattle in Accra. (S3J) Average read counts per cow over the time course. (XLSX)