GEAplus - IPK barley landrace GBS data

This dataset contains VCF files derived from a barley landrace collection maintained by the IPK genebank. The original genotyping-by-sequencing (GBS) data were published by Milner et al. (2019) : https://doi.org/10.1038/s41588-018-0266-xThe data were used in a study on geographical origin inference and genome-environment association (GEA). For more details, please refer to our preprint: https://doi.org/10.1101/2025.02.13.638161 The dataset includes the following files: VCF for training the geographical origin inference modelgbs_1688inds_beagle_imputed_558kSNP_for_locator.vcf.gz VCF for predicting the geographical origins of the entire landrace collectiongbs_landrace_12129inds_beagle_imputed_isec558kSNP.vcf.gz VCF of geo-referenced accessions for GEA analysisgbs_georef_1626inds_beagle_imputed_homo_maf0.01_het0.1_87K_SNP.vcf.bgz VCF of the full landrace collection for GEA analysisgbs_landrace_12129inds_beagle_imputed_isec87kSNP_forGEA.vcf.gz