Repeat annotation of the Tibetan wild ass genome (under the Genbank BioProject PRJNA1299250)
收藏DataCite Commons2025-10-28 更新2026-05-09 收录
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https://figshare.com/articles/dataset/The_genomic_annotation_data_of_the_Tibetan_wild_ass_in_GFF_format_was_retrieved_from_the_NCBI_BioProject_database_under_the_accession_number_PRJNA1299250_/30461624/2
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Tandem repeats were predicted with GMATA (v2.2) and Tandem Repeats Finder (TRF, v4.07b). The LTR_retriever pipelines were then applied to build a curated LTR transposable-element library (TE-library), while RepeatModeler (open-1.0.11)generated a de novo repeat library (RepMod-library). The TE--library, the RepMod- library, and the Repbase database (v20181026) were merged into a comprehensive repeat library, which was subsequently used by RepeatMasker (Revision 1.331)to mask and annotate repetitive sequences across the entire genome.
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figshare
创建时间:
2025-10-28



