Additional file 1 of Convergence of YAP/TAZ, TEAD and TP63 activity is associated with bronchial premalignant severity and progression

Additional file 1: Supplementary Table S1. HBEC patient info. Supplementary Table S2. siRNA information. Supplementary Table S3. ChIP-qPCR primers. Supplementary Table S4. TF amplification frequencies in TCGA LUSC. Supplementary Table S5. TF overexpression in TCGA LUSC compared to normal samples. Supplementary Table S6. Top enriched TFs by BART and ChEA3 among the top 500 genes upreguatled with histological grades (BART results were ranked by Irwin Hall p-value. ChEA3 results were ranked by the MeanRank results). Supplementary Table S7. Differential expression results for the TEAD-TP63 directly regulated genes. Supplementary Table S8. Differential expression results for the MHC II genes (shown in Figure 5C) by progression status in PML datasets.