Single-cell whole genome sequencing data from three mouse (C57BL/6) lymphocytes
收藏Figshare2025-02-09 更新2026-04-08 收录
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https://figshare.com/articles/dataset/Single-cell_whole_genome_sequencing_data_from_three_mouse_C57BL_6_lymphocytes/28369088/3
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资源简介：
Single-cell whole genome sequencing data from three selected mouse (C57BL/6) lymphocytes from Rohrback et al. 2018 PNAS paper 'Submegabase copy number variations arise during cerebral cortical neurogenesis as revealed by single-cell whole-genome sequencing'. This dataset is solely for the purpose of testing installation in HiScanner (https://github.com/parklab/HiScanner/), a single cell copy number detection method. If you want to access the full dataset and/or use it for other purposes, please cite the original paper and check SRA regulation.This dataset contains the following:<b>bams/</b>├── SRR6204878_sra.bai├── SRR6204878_sra.bam├── SRR6204878_sra.bam.md5├── SRR6204923_sra.bai├── SRR6204923_sra.bam├── SRR6204923_sra.bam.md5├── SRR6204925_sra.bai├── SRR6204925_sra.bam└── SRR6204925_sra.bam.md5(aligned to GRCm38/mm10 genome)<br><b>scan2_out/</b>├── gatk│ ├── hc_raw.mmq60.vcf.gz│ └── hc_raw.mmq60.vcf.gz.tbi└── shapeit├── phased_hets.vcf.gz└── phased_hets.vcf.gz.tbi(Simulated hetSNP and phasing information; required input for HiScanner)<br><br><b>mappability/100mer.chr*.txt </b>(matched mappability tracks required by HiScanner)<br>
提供机构：
Zhao, Yifan
创建时间：
2025-02-09
