Comparison of the best matching solutions for Arp 2/3, TFIID, and 20S proteasome complexes.

Homologous proteins correctly included in the best matching solution of at least one algorithm. For Arp 2/3 complex, 4 out of 6 proteins really participate to Arp2/3 human complex, while the other 2 (omitted) are homologous proteins incorrectly included in the solution. NetworkBLAST and Mawish did not provide any solution overlapping with this complex. For TFIID and 20S proteasome complexes, the quality of AlignNemo solution is highlighted by the number of protein pairs belonging to the complex but not selected by Mawish and NetworkBLAST.