Single-cell information extracted from IMC example data
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下载链接：
https://zenodo.org/record/6554544
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资源简介：
If you are working with these files, please cite them as follows:Windhager, J., Zanotelli, V.R.T., Schulz, D. et al. An end-to-end workflow for multiplexed image processing and analysis. Nat Protoc (2023). https://doi.org/10.1038/s41596-023-00881-0
This repository contains additional information related to IMC example data available at zenodo.org/record/5949116. The following files are available and are part of the IMC Data Analysis workflow
gated_cells.zip: contains SpatialExperiment objects storing cells that were manually gated based on their expression values to derive ground truth cell phenotype labels.
spe.rds: SpatialExperiment object containing the single-cell information (mean intensity per cell and per channel; cellular metadata; channel metadata) of the processed data.
images.rds: CytoImageList object containing the spillover-corrected images.
masks.rds: CytoImageList object containing the segmentation masks.
创建时间：
2023-11-27
