10 - ExtendedFigure1_CNValongCHR_AllTargetsIncluded

Extended Figure 1. CNV along chromosomes for all targeted loci. Each line represents an individual (one colour per race plus Medicago standard in purple). For clarity, values of alpha represented here are those before rounding to the closest half unit (the red box represents the area in which alpha values were rounded to one). Vertical light grey shaded areas represent targets as originally designed whereas bottom dark grey and gold boxes represent subtargets excluded and retained for final analyses, respectively. Retained subtargets are linked by full lines when from the same target and by dotted lines where not. Gene names (and scaffold numbers) are indicated above each plot. Control genes are shown with their alias names. The “P” in gene names stands for pseudogene. The “*” symbol indicates genes partially represented due to the absence of targets upstream or downstream filtered out during cleaning steps.