Data Sets and Results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"

Name: Data Sets and Results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"
Creator: Zenodo
Published: 2021-08-02T17:06:56+08:00

Zenodo2021-08-02 更新2026-05-25 收录

DNA结合蛋白预测

蛋白质功能

数据链接：

https://zenodo.org/record/5137961 数据链接链接失效反馈

官方服务：

资源简介：

Data sets and results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins" The file "dna_binding_protein_sequences.zip" has the training and testing sets from the paper: RLL - "random_<train/test>_full_1000.csv" RSL - "random_<train/test>_40.csv" RS&LL - "random_<train/test>_40_1000.csv" RLL where included positive examples have verified DNA binding activity - "random_<train/test>_hq_1000.csv" The 10 RS&LL data sets - "random_<train/test>_40_1000.csv" + "random_<train/test>_40_1000_cv_<0-8>.csv" The results files are named similarly. See "see_results.ipynb" in the codebase that supplement these data sets The species data sets are derived from "uniprot_data_bac.tab" and "uniprot_data_not_bac.tab." See code. The ESM embeddings used by the XGBoost model are in "dna_binding_protein_esm.zip"

提供机构：

Zenodo

创建时间：

2021-08-02

Data Sets and Results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"

资源简介：

相关数据集