lamm-mit/protein-secondary-structure-netsurfp

该数据集存储库包含NetSurfP衍生的蛋白质二级结构标签，已转换为用于Protein-I-JEPA探针训练和评估的格式。标签为Q3每残基标签：H表示螺旋，E表示β链，C表示卷曲/其他，.表示在损失和准确度计算中被忽略的残基。数据集包括多个分割：train（训练集，10348行）、validation（验证集，500行）、cb513（测试集，513行）、ts115（测试集，115行）和casp12（测试集，21行），推荐使用train训练监督探针、validation调整探针设置、其他分割进行最终外部测试。This dataset repo contains NetSurfP-derived protein secondary-structure labels converted for Protein-I-JEPA probe training and evaluation. Labels are Q3 per-residue labels: H for helix, E for beta strand, C for coil/other, and . for ignored residue for loss and accuracy. The dataset includes splits: train (10348 rows), validation (500 rows), cb513 (513 rows), ts115 (115 rows), and casp12 (21 rows), with recommended use of train for probe training, validation for tuning, and other splits for final external tests.