File S1 - Local-Scale Diversity and Between-Year “Frozen Evolution” of Avian Influenza A Viruses in Nature

Figure S1. Locality P. The samples in 2009 were collected from mallards inhabiting the pond called Putim (GPS coordinates 49°16′42.629″N, 14°8′9.881″E). The green flag on the map S1c represents the position of the S1a view. Figure S1b shows wooden huts distributed along the shore. The map was generated by the www.mapy.cz. Figure S2: Locality H. The samples in 2010 were collected from mallards resided the pond called Kahoun which is situated near the Hajany village (GPS coordinates 49°26′59.547″N, 13°49′52.568″E). The green flag on the map S2b represents the position of the panoramic view S2a. The map was generated by the www.mapy.cz. Table S3: Nucleic acid sequence identity matrices of the locality P and H avian influenza virus segments. The matrices were constructed using the BioEdit program on the basis of nucleotides 1251–2288 (1038) of PB2, 1465–2289 (825) of PB1, 783–1401 (649) of PA, 816–1724 (909) of H6, 679–1274 (596) of H11, 748–1544 (797) of NP, 568–889 (322) of N2, 1050–1431 (382) of N9, 203–1006 (804) of MP, and 540–870 (331) of NS. The tables were highlighted with a segment specific color which is corresponding to Figures 1 and 2 and the abbreviations with Table 1 respectively.
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