Additional file 1: of Metabolic pathways and genes identified by RNA-seq analysis of barley near-isogenic lines differing by allelic state of the Black lemma and pericarp (Blp) gene

Tables “Genes” (List of genome fragments identified by TopHat2, their genomic location, RPKM values in six samples and annotation), “Cufflinks” (Differentially expressed genes identified by Cufflinks), “EdgeR” (Differentially expressed genes identified by EdgeR), Table “UpRegDEGS_Cufflinks & EdgeR” (Differentially expressed genes identified by Cufflinks and EdgeR, upregulated in BLP line), and “DownRegDEGS_Cufflinks & EdgeR” (Differentially expressed genes identified by Cufflinks and EdgeR, downregulated in BLP line). (XLSX 2557 kb)