Conversion Script for Model Building from KEGG-Reactome Data to SBTOOLBOX2

- automated integration of transcriptomic and reactome data to differential equations
- structure of the paths is maintained
- continuous fermentation model in standard format for data integration, two component model (cell and fermenter)

call >> Kegg2SBToolbox2('model_map.txt', 'reactions_compounds_final.csv','extracellular.txt','testmodel.txt') for an example

where
model_map is the desired mapping of species,
reaction_compounds_final.csv is the entire network,
extracellular.txt is a manual mapping which compounds are in extracellular-space,
testmodel.txt is the output model

自动化整合转录组学和Reactome数据至微分方程模型中，保持路径结构完整；采用标准格式构建连续发酵模型以实现数据集成，该模型采用双组分模型（细胞与发酵罐）。

执行以下命令以获取示例：

call >> Kegg2SBToolbox2('model_map.txt', 'reactions_compounds_final.csv','extracellular.txt','testmodel.txt')

其中，

model_map 为物种映射的期望值，
reaction_compounds_final.csv 为整个网络，
extracellular.txt 为手动映射的位于细胞外空间的化合物，
testmodel.txt 为输出模型。