Exploring high PT experimental charges through the lens of phase maps: Dataset

Main dataset

This dataset contains the files required to reproduce the figures and findings delivered in the manuscript: "Exploring high PT experimental charges through the lens of phase maps"

Balz S. Kamber 1, *, Marco A. Acevedo Zamora 1, Rodrigo Freitas Rodrigues 2, Ming Li 3, Gregory M. Yaxley 2, and Matthew Ng4

1   School of Earth and Atmospheric Sciences, Queensland University of Technology; [e-mail]; [e-mail]

2   Research School of Earth Sciences, Australian National University; [e-mail]; [e-mail];

3   Central Analytical Research Facility, Queensland University of Technology; [e-mail];

4   Matthew Ng, NewSpec Pty Ltd Australia; [e-mail];

*   Author to whom correspondence should be addressed.

The folders contains:

scripts_update = scripts to generate the phase maps after QuPath segmentation ('qupathPhaseMap_v10_simplified.m') and re-stitch an AMICS software montage.

UHP32_21_40_whole sample_QuPath segmentation = QuPath segmentation phase maps presented in the figures.

UHP32_AMICS Data_auto-stitched = direct AMICS software montage output with different acquisition settings.

UHP32_AMICS Data_re-stitched = image tiles manually exported from AMICS software that need to be processed with the 'imageJ_stack_matthew_v3.py' script.

UHP32_detailed AMICS map_QuPath segmentation benchmark = QuPath segmentation phase map using the output montages from 'UHP32_AMICS Data_re-stitched' folder.

UHP32_TIMA_whole sample_custom library = folder containing the whole sample TIMA phase map after using the custom library.

UHP32_TIMA-AMICS comparison_Figure 9 crop = folder containing the comparison image stacks between the AMICS and TIMA experiments in SEM backscattered electrong (BSE) imaging mode.

The sub-folder structure is (depth 2):

F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitchedF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_auto-stitchedF:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom libraryF:\Zenodo_Kamber et al. 2025\UHP32_21_40_whole sample_QuPath segmentationF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmarkF:\Zenodo_Kamber et al. 2025\scripts_updateF:\Zenodo_Kamber et al. 2025\UHP32_TIMA-AMICS comparison_Figure 9 cropF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 32F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Matrix Mapping exported framesF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 8F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 16F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 32\BSEF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 32\MineralF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 32\outputF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 32\output2F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Matrix Mapping exported frames\BSEF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Matrix Mapping exported frames\MineralF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Matrix Mapping exported frames\trakem2.1733695048663.26926198.2073909859F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Matrix Mapping exported frames\trakem2.1733695088287.26926198.2073909859F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Matrix Mapping exported frames\trakem2.1733720140791.26926198.2073909859F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Matrix Mapping exported frames\trakem2.1733722222498.26926198.2073909859F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Matrix Mapping exported frames\trakem2.1733723879137.26926198.2073909859F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Matrix Mapping exported frames\trakem2.1733726613532.26926198.2073909859F:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Matrix Mapping exported frames\outputF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 8\BSEF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 8\MineralF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 16\BSEF:\Zenodo_Kamber et al. 2025\UHP32_AMICS Data_re-stitched\Particle Mapping_scan speed 16\MineralF:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom library\UHP32_TIMA_QuPath segmentation_bulkF:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom library\newLibrary_18apr24_MarcoF:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom library\TIMA metadata logF:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom library\UHP32_TIMA_QuPath segmentation_bulk\QUPath_segmentation_projectF:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom library\UHP32_TIMA_QuPath segmentation_bulk\UHP32_tima default exportF:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom library\newLibrary_18apr24_Marco\custom_library_dotMapping_trial1F:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom library\newLibrary_18apr24_Marco\custom_library_trial1F:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom library\newLibrary_18apr24_Marco\custom_library_trial2F:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom library\newLibrary_18apr24_Marco\default_TIMA libraryF:\Zenodo_Kamber et al. 2025\UHP32_TIMA_whole sample_custom library\newLibrary_18apr24_Marco\standardsF:\Zenodo_Kamber et al. 2025\UHP32_21_40_whole sample_QuPath segmentation\#21F:\Zenodo_Kamber et al. 2025\UHP32_21_40_whole sample_QuPath segmentation\#40F:\Zenodo_Kamber et al. 2025\UHP32_21_40_whole sample_QuPath segmentation\#32F:\Zenodo_Kamber et al. 2025\UHP32_21_40_whole sample_QuPath segmentation\#21\EDX_21F:\Zenodo_Kamber et al. 2025\UHP32_21_40_whole sample_QuPath segmentation\#21\HR_BSE_21F:\Zenodo_Kamber et al. 2025\UHP32_21_40_whole sample_QuPath segmentation\#40\EDX_40F:\Zenodo_Kamber et al. 2025\UHP32_21_40_whole sample_QuPath segmentation\#40\HR_BSE_40F:\Zenodo_Kamber et al. 2025\UHP32_21_40_whole sample_QuPath segmentation\#32\High_Resol_panorama_32_2F:\Zenodo_Kamber et al. 2025\UHP32_21_40_whole sample_QuPath segmentation\#32\QUPath_segmentation_projectF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNRF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_TIMAF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\EDX_item 1F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\registration_11-Apr-24F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712280071953.546507025.450761598F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712295256565.546507025.450761598F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712297199695.546507025.450761598F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNR\coarse_montageF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNR\fine_montageF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNR\s10F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNR\s3F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNR\s4F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNR\s5F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNR\s6F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNR\s7F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNR\s8F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\#32_MIRA-Image Snaper SNR\s9F:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\EDX_item 1\32#2-DotF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\EDX_item 1\32#2-HRF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\registration_11-Apr-24\registeredF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\registration_11-Apr-24\stacks_tilesF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\registration_11-Apr-24\unregisteredF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712280071953.546507025.450761598\features.serF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712280071953.546507025.450761598\pointmatches.serF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712280071953.546507025.450761598\trakem2.masksF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712280071953.546507025.450761598\trakem2.mipmapsF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712295256565.546507025.450761598\trakem2.mipmapsF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712297199695.546507025.450761598\features.serF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712297199695.546507025.450761598\pointmatches.serF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712297199695.546507025.450761598\trakem2.itsF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712297199695.546507025.450761598\trakem2.masksF:\Zenodo_Kamber et al. 2025\UHP32_detailed AMICS map_QuPath segmentation benchmark\trakem2.1712297199695.546507025.450761598\trakem2.mipmaps

Further information might be requested to the main authors.