Summary of ALL data analysis.

Results represent a pooled analysis of the 3 SNPs comparing calls made using either the default or manual settings of the software. The genotypes that can not be called are sub-divided in two classes: NA calls which correspond to an inappropriate normalized fluorescent value outside of confidence intervals and THR calls, which correspond to raw fluorescence under the minimal threshold. Accuracy, which represents the percent of ALG calls similar to the calls obtained by sequencing experiments, and reproducibility are measured in each condition. Reproducibility and accuracy are measured when all calls are taken into account (1) or when only genotypic calls are considered (2, no Na and THR calls). Measures are reported in terms of number of SNPs specifically called, the overall number of SNPs called and the corresponding percentage.