Supplementary Table 5. Analysis of overlapping fragments pairs

We examined all pairs of overlapping fragments, which had been previously filtered based on sharing, parental origin and genealogy (Table 1) to evaluate allelic consistency. The intersecting region in each pair was assessed for discrepancies, which led to the trimming of ends or removal of fragments in some instances (see Methods). We list the average number of discrepant positions, where we observe more than one allele, per Mb (Mismatch per Mb), for each chromosome prior and post trimming/removal of fragments.