PepQueryMHC: Rapid and Comprehensive Tumor Antigen Prioritization from Immunopeptidomics Data

Data Description LUAD_MHC_I_GTEX.tsv: RNA-seq expression of selected class I tumor antigens from a published lung adenocarcinoma immunopeptidomics study (Abelin, J. G. et al., Gillette, M. A. et al., Lonsdale, J. et al.). LUAD_MHC_II_GTEX.tsv: RNA-seq expression of selected class II tumor antigens from a published lung adenocarcinoma immunopeptidomics study (Abelin, J. G. et al., Gillette, M. A. et al., Lonsdale, J. et al.). MSK_LUAD_Primary_seurat_object.rds: Seurat object containing the single-cell RNA-seq dataset of eight primary lung adenocarcinoma samples (processed) (Laughney, A. M. et al.). PepQueryMHC_top10p_result.tsv: Top 10% most abundant peptides expressed in the eight primary lung adenocarcinoma single-cell RNA-seq samples (Laughney, A. M. et al.). PepQueryMHC.v1.0.5.jar and source code