FilamentSensor 2.0: An open-source modular toolbox for 2D/3D cytoskeletal filament tracking

This is the software described in our article 'FilamentSensor 2.0: An open-source modular toolbox for 2D/3D cytoskeletal filament tracking' and the used datasets for image analysis. It is intended as a easy to use software for tracking of cytoskeletal fibers offering both source code and GUI-based executable. Datasets are sorted according to figures in the article with folders containing raw images, analysis results and resulting figure files. The source folder also includes a tutorial and installation notes.

For a system running Ubuntu 21.04 there is a slightly modified command line needed: java --module-path /usr/share/openjfx/lib –add-modules=javafx.base,javafx.controls,javafx.fxml,javafx.graphics,javafx.media,javafx.swing,javafx.web -jar GUIFocalAdhesionOnly.jar