Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic Code used for plotting of main figures and quantifying allelic shifts attached in the GitHub repository CareyMetheringham/MardenPark. Additional files for analysis of GEBV shifts between adults and juveniles, estimation of heritability, trends in green up and simulations of allelic shifts included as: GEBV-regression.Rmd heritabilityEst.R GreeningAnalysis.R Simulated_selection_analysis.Rmd Distinguishing the effects of selection from genetic drift.pdf Data files: S1 - phenotypic measurements for adult and juvenile trees S2 - Effect sizes for SNPs used to calculate GEBV S3 - Allelic frequencies of sites used to calculate GEBV related_trees.csv - Predicted parentage of trees gebv_model_df.csv - Data used for greenup calculations in GreeningAnalysis.R maf1.pass2.miss25.snps.only.LD.vcf - Filtered file of high MAF SNPs used for parentage estimation unlinked_sites.csv - unlinked sites used in GEBV-regression.Rmd ebv_table_10000_250 - table of estimated breeding values in field trial populatio, used for heritability estimation MP_eefects_MIA_and_MAA.csv - Data for plotting Figure 3 - Estimated effect size of the major and minor allele, plus standard error on the estimate