Genotypes and phenotypes of rainbow trout

This dataset is composed of 10 files. <br> 2 files are the <strong>raw genotypes (Trout_CD.ped) and map (Omykiss_57K.map)</strong> obtained with the 57K SNP Axiom Trout Genotyping Array in PLINK 1.9 format prior to quality control filtering after SNP calling with Axiom Analysis Suite. <strong>Files containing both challenged offspring and fish from the previous generation (including parents)</strong> <br> 3 files (<strong>Trout_CD.bed ; Trout_CD.bim ; Trout_CD. fam</strong>) are the genetic data in PLINK 1.9 binary format after quality controls <strong>of the challenged fish (2,874 offspring).</strong> <br> 1 file (<strong>Trout_CD_phenotype.txt</strong>) is a table of <strong>phenotype</strong> and covariates for the challenged fish. <br> 1 file (<strong>Trout_CD.pedigree</strong>) is the <strong>pedigree file </strong>with ID, Sire, Dam, Sex. <br> 3 files (<strong>AquaImpact_trout_all.bed, .bim .fam</strong>) are the genetic data in PLINK 1.9 binary format, after quality control of <strong>both offspring and fish from the previous generation</strong> (including parents) used for imputation of the ossfpring genotype. <strong>3,435 individuals</strong>