Recombination rate variation in Cardiocondyla obscurior

Datasets produced to analyze recombination rate variation in C. obscurior. This includes the following files:

- TEislands.w250kb.bed: bed file with coordinates of TE islands

- final.metrics.in250kbwindows.tsv: tsv file with various metrics estimated in 250-kb nonoverlapping windows. These metrics include recombination rates, population genomics estimates as well as other sequence parameters (e.g. TE/gene content)

- introgression.250kb.bed: bed files with coordinates of regions with substantially high Dxy between grandparental haplotypes

- manuallyCurated.markers.forR.txt: formatted and manually curated MSTmap output

- Cobs3.1.chrom-size.txt: chromosome length

- manuallyCurated.markers.correctPhase.xlsx: markers used to produce reference genetic map with the correct phase

- SVs folder: contains:

---- sv.bed.filtered.repeat.0.2.txt: coordinates of SVs with less than 0.2 repeat content

---- sv.type.recomb.repeat.freq.all.txt: coordinates and frequencies of all SVs as well as their repeat content (meanperc column) and the corresponding recombination rate