BAM files and associated inputs used to generate data shown in Figure 4 of NAGATA manuscript. Outputs from NAGATA, StringTie2, Isoquant, and Bambu are also included
TAB-delimited LASTZ output from matches of probes in all-probes.fasta to the vertebrate genomes in Supplementary Table 1. We parsed this file to remove duplicates. We archived results for non-duplica
BED format genome alignment results where japonica nipponbare was used as reference and indica 93-11 was used as query genome. Indica chromosome was named as SAI.chromosome_number and japonica chromos
The upper triangular values for each accession represent the proportion of sequences at the left that were present in the sequences at the top of the triangle. The lower triangular values represent th
