Annotation files related to the Telomere-to-Telomere genome assembly of the clubroot pathogen Plasmodiophora brassicae (GCA_036867785.1)

This repository contains annotation files related to the T2T genome aseembly of Plasmodiophora brassicae. Link to the NCBI genome submission- https://www.ncbi.nlm.nih.gov/bioproject/1071157

Description of the files :

GCA_036867785.1_ULAVAL_Pb3A_genomic.fna - Soft-masked genome sequence FASTA file representing 20 chromosomes.

sequence_report.jsonl - Detailed information about individual chromosome seqeunce.

PBTT_annotation.gtf - GTF file corresponding to the genomic FASTA file.The GTF file was generated by BRAKER3 and contains information about all possible transcripts.

PBTT_CDS_longest_isoform.fasta - Contains 10521 FASTA sequences representing the CDS of only the longest isoform of the gene models.

PBTT_protein_longest_isoform.fasta - Contains 10521 FASTA sequences representing the amino acid sequences of only the longest isoform of the gene models.