The Alteromonas Digital Microbe without Singletons

This describes an Alteromonas digital microbe that contains a pangenome (without singleton genes) as well as corresponding item and layer data. This digital microbe is authored by Michelle DeMers (MIT) and Rogier Braakman (MIT) with help from the Meren Group and Moran Lab. The following files are included:

Alteromonas_2_1_1_dbs.tar.gz: A compressed directory of all genomes dbs and the genome storage db used to make the pangenome.

Alteromonas_Pangenome_2_1ns-PAN.db.tar.gz: The compressed pangenome without singletons.

nsPangneomeFile*.tar.gz: A compressed directory of files produced while making the pangenome.

external-genomes-v2.txt: The external genomes file that contains the name of each genome with the genome ID.

layer_orders.txt: Phylogeny file from v 2.1.1 of this digital microbe.

ANI2_1ns.tar.gz: Compressed directory produced when calculating ANI.