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The impact of RNA structures in coding sequences (CDS) within mRNAs is poorly understood
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A regression-based analysis of ribosome-profiling data reveals a conserved complexity to mammalian translation. Mus musculus
A fundamental goal of genomics is to identify the complete set of expressed proteins. Automated annotation strategies rely on assumptions about protein-coding sequences (CDSs), e.g., they are conserve
NIAID Data Ecosystem70
Additional file 2 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP
Additional file 2: Table S1. Table of GO terms enriched in Tsc2+/−/WT upregulated RNA and RPFs from Fig. 1D, E (padj < 0.05 for cellular compartment, molecular function, and biological process).
NIAID Data Ecosystem30
Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.. Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.
Hfq is a transcriptional and translational pleiotropic regulator in several bacteria. RNA-Seq, Ribo-Seq and Proteomic analyses were carried out in the wild-type and a hfq deletion strain of Pseudomona
NIAID Data Ecosystem20
Ribosome profiling of interspecific hybrids of Saccharomyces cerevisiae and S. paradoxus.
Ribosome profiling was performed on interspecific hybrids of Saccharomyces cerevisiae and S. paradoxus in order to identify allele-specific expression indicative of cis-regulatory divergence at the le
NIAID Data Ecosystem40
Ribosome profiling data from the model diatom Thalassiosira pseudonana Part 2
Sequencing data from ribosome profiling run described in the protocol paper 'Ribosome profiling in the model diatom Thalassiosira pseudonana' HT_4: High temperature exposure (32°C) for 4 hours HT
NIAID Data Ecosystem30
