Supplemental Figure 14: Bin mapping and gene candidates.

Supplemental Figure 14: Bin mapping and gene candidates. A-D) Graphs showing select bin and IL mapping results for traits as indicated. Below the graph is an IL map for the region and trait. The size of ILs is proportional to the number of annotated genes that they possess. Colors indicate significance of detected QTL for trait values less than cv. M82 (blue) or greater than cv. M82 (yellow; see key, upper righthand corner). Above the IL map is indicated significance values from bin mapping. The height of a column within the bin region indicates the -log10(p-value) of the bin significance, and like ILs, the columns are appropriately colored. A) shows results for FlowTime, d-5E, B) LftAR, d-9B, C) LftAR, d-8F, D) CompAll, d-8A. See text for discussion of candidate genes regulating these traits. E) Annotated genes present in bin-5E. Chromosome position is indicated, as well as predicted genes and their orientation (red, forward; black, reverse orientation). On this short interval lies SP5G, a strong candidate regulating the flowering time QTL detected for this bin and perhaps a regulator of leaf morphology as well.