Analysis scripts, processed results, and figure source data for phenotype-stratified functional convergence of osteoarthritis loci across human knee single-cell programs

This record contains the analysis-only reproducibility package for the study “Phenotype-stratified functional convergence of osteoarthritis loci across human knee single-cell programs”. The package includes analysis scripts, processed result tables, and figure source data supporting the phenotype-first locus grouping, candidate effector mapping, human knee single-cell atlas integration, refined cell-program convergence analysis, gene-set permutation testing, and donor-aware cartilage confirmation. This record does not include manuscript-writing files, cover letters, journal-specific submission materials, or scripts used only for publication-format figure/table formatting. Candidate effectors are provided as convergence-supporting genes, not causal-gene proof. Drug annotations, where present, are contextual only.