Resources for "A longitudinal survey in the wild reveals major shifts in fish host microbiota after parasite infection"

Here are provided necessary datasets and codes to replicate the analyses done in the study entitled “A longitudinal survey in the wild reveals major shifts in fish host microbiota after parasite infection” Mathieu-Bégné Eglantine¹*, Blanchet Simon^2,3, Rey Olivier⁴, Toulza Eve⁴, Veyssière Charlotte², Manzi Sophie², Lefort Maxim³, Scelsi Orlane³ and Loot Géraldine^2,5 1 Department of Environmental Sciences, Zoology, University of Basel, Vesalgasse 1, 4051, Basel, Switzerland 2 Université Paul Sabatier, Centre National pour la Recherche Scientifique, Ecole Nationale de Formation Agronomique; Laboratoire Evolution et Diversité Biologique (UMR5174), 118 route de Narbonne, F-31062 Toulouse, France 3 Université Paul Sabatier, Centre National pour la Recherche Scientifique; Station d’Ecologie Théorique et Expérimentale (UPR2001), 2 route du CNRS, F-09200 Moulis, France 4 IHPE, Univ. Montpellier, CNRS, Ifremer, Univ. Perpignan Via Domitia, 58 Avenue Paul Alduy, F-66860, Perpignan, France 5 Institut Universitaire de France, Paris, France