Additional file 1 of Integrative genomic and transcriptomic analysis of Xanthomonas oryzae pv. oryzae pathotype IV, V, and IX in China reveals rice defense-responsive genes

Additional file 1: Table S1. Disease response of different rice cultivars to Xoo strains GD0201, GD1358, and GD0202. Table S2. Disease phenotype of 206 rice cultivars inoculated with GD1358 and GD0202. Table S3. Sequencing and assembly information of three Xoo genomes and predicted protein percentage against various protein databases. Table S4. ANI analysis between strains GD0201, GD1358, GD0202, and other Xanthomonas strains. Table S5. Non-TAL effector coding genes in various Xoo strains. Table S6. RVDs of TAL effectors in GD0201. Table S7. RVDs of TAL effectors in GD1358. Table S8. RVDs of TAL effectors in GD0202. Table S9. Classification of TAL effectors in different Xoo strains according to RVDs. Table S10. List of 14 hub genes. Table S11. Primers used in the RT-qPCR analyses.