Phylogenetically under‐dispersed gut microbiomes are not correlated with host genomic heterozygosity in a genetically diverse reptile community
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https://datadryad.org/dataset/doi:10.5061/dryad.f7m0cfxzb
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资源简介:
We are providing semi-processed datasets relevant to the paper
"Phylogenetically under-dispersed gut microbiomes across a range of
host genetic diversity in a reptile community point to structuring by
conserved host genes." Specifically, we include VCF files of RADseq
data from host individuals, which are processed versions of the raw reads
available at NCBI's Short Read Archive under PRJA744273. These data
were processed for heterozygosity calculation using an adapted of the
pipeline presented in Singhal et al. 2017, "Genetic diversity is
largely unpredictable but scales with museum occurrences in a species-rich
clade of Australian lizards." In addition, we include a database of
16S sequences from gut microbiome amplicon sequencing from the same host
animals. The raw reads are available at NCBI's Short Read Archive
under PRJNA746253. The sequences accessioned here are a curated, cleaned
set of reference reads to which we realigned reads from each individual
host.
提供机构:
Dryad
创建时间:
2023-11-08



