Data and code for 'Connectivity over a disease gradient enables recovery of rainforest frogs'

This repository provides all data and R code from the analysis presented in the following paper:

Bell, S.C., Heard, G.W., Berger, L. and Skerratt, L.F. (in review). Connectivity over a disease risk gradient enables recovery of rainforest frogs.  

The data are provided as a series of .csv files. R code is provided separately for each of the following components:

1. A script to collate nightly air temperature data from stream-side temperature loggers, plus daily maximum air temperature data from the nearest Australian Bureau of Meteorology recording station to each site.

2. A script to fit a hierarchical linear model to the stream-side air temperature, with the aid of the R2OpenBUGS package.

3. A script to fit a hierarchical logistic regression model to the chytrid infection data, with the aid of the R2OpenBUGS package.

4. A script to fit logistic regression models to the frog occupancy data, with the aid of the R2OpenBUGS package. 

These files allow all analyses from the paper to be reproduced.