Motion Correction of Thermal Craniotomy Images

Contained are data, methods, and code for reproducing efficiency analyses of motion correction methods for thermal craniotomy images. Additional descriptions and visualizations are contained in the corresponding manuscript, titled "Comparing the Efficiency of Motion Correction Algorithms for Craniotomy Thermal Images".

Analysis - contains all results and analysis code (see steps to reproduce below)
Dataset - contains thermal data from 40 patients (saved as .mat files)
Methods - code for each of the motion correction methods compared in the study

Each file in dataset contains, for each patient:
The raw original video (video variable)
The video stabilized video (reg variable)
A binary manual mask (mask variable)

Note that the reg variable is uploaded at single precision to fit within repository limits. It can be reconstructed in double precision by running the video stabilization pipeline.