five

Bacterial and human proteomes dataset

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DataCite Commons2025-03-26 更新2025-04-16 收录
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https://figshare.scilifelab.se/articles/dataset/Bacterial_and_human_proteomes_dataset/28359677
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The dataset consists of a fasta file including 36 bacterial species and the human proteome obtained from the Uniprot database. The 36 bacterial species were chosen based on ≥ 1 % detection of total reads in 16S sequencing data of dried cervicovaginal fluid from paper cards. This dataset can be used as a reference file for quantification of bacterial proteins using maxquant. The fasta file contains a representative proteome for the following species:<br><b>Proteome_ID</b><b>Species</b>UP000234775<i>Aerococcus christensenii</i>UP000016519<i>Alloscardovia omnicolens</i>UP000005984<i>Anaerococcus lactolyticus</i>UP000003191<i>Bifidobacterium breve</i>UP000003503<i>Dialister micraerophilus</i>UP000005947<i>Fannyhessea vaginae</i>UP000005392<i>Fusobacterium animalis</i>UP000002521<i>Fusobacterium nucleatum</i>UP000258888<i>Gardnerella vaginalis</i>UP000255264<i>Haemophilus pittmaniae</i>UP000004115<i>Lactobacillus iners</i>UP000003242<i>Megasphaera lornae</i>UP000002631<i>Mycoplasma hominis</i>UP000004206<i>Peptostreptococcus anaerobius</i>UP000002786<i>Prevotella bivia</i>UP000033103<i>Sneathia vaginalis</i>UP000000423<i>Ureaplasma parvum</i>UP000029628<i>Veillonella montpellierensis</i>UP000003744<i>Anaerococcus tetradius</i>UP000253807<i>Haemophilus parainfluenzae</i>UP000067598<i>Lactobacillus crispatus</i>UP000189488<i>Lactobacillus gasseri</i>UP000327236<i>Lactobacillus jensenii</i>UP000318911<i>Lactobacillus mulieris</i>UP000070160<i>Megasphaera hutchinsoni</i>UP000070531<i>Prevotella amnii</i>UP000254072<i>Prevotella disiens</i>UP001254699<i>Sneathia sanguinegens</i>UP000238573<i>Streptococcus anginosus</i>UP000008693<i>Bifidobacterium dentium</i>UP000005388<i>Streptococcus urinalis</i>UP000189488<i>Lactobacillus gasseri</i>UP000000821<i>Streptococcus agalactiae</i>UP000000625<i>Escherichia coli</i>UP000008816<i>Staphylococcus aureus</i>UP000000431<i>Chlamydia trachomatis</i>UP000005640<i>Homo sapiens</i>
提供机构:
Uppsala University
创建时间:
2025-02-06
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